PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0098s0054.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 432aa    MW: 48766.4 Da    PI: 6.957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0098s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.79.8e-26106207186
             trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                          +Wt+ +v++Li a+ +++++ +++                +kk++W++vs++m+e+gf++sp+qC++k+++lnkryk+++e+ +k+ +++
  Kaladp0098s0054.1.p 106 KWTDGMVRLLIMAVYYIGDECGSEGggeagagkkkagalmQKKGKWKSVSRAMMEKGFHVSPQQCEDKFNDLNKRYKRVNEILGKGtACK 195
                          7**************9999999754455677788899999**********************************************55** PP

             trihelix  75 ssstcpyfdqle 86 
                          ++++ +++dq++
  Kaladp0098s0054.1.p 196 VVENQSLLDQMD 207
                          ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-22104233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGNGLRGGI FSNLSPGILG LEMPIQQQPP PPPQPQPPQQ RPQNPHHFHP QMVAFARPET  60
DHSSQMKQPG YPYAANPRQL SDDEEGGTEE NAADGKRKGS PWQRMKWTDG MVRLLIMAVY  120
YIGDECGSEG GGEAGAGKKK AGALMQKKGK WKSVSRAMME KGFHVSPQQC EDKFNDLNKR  180
YKRVNEILGK GTACKVVENQ SLLDQMDHLT PKSKEEARKL LNSKHLFFRE MCAYHNSCGG  240
GAGHHSPEQA LAPRNSSETL QIHHSNNSHN HSEGEGDDED SENEEDDDSQ NEEEEGEVRC  300
STKRRIEGEA GLRGLEGEVG AVMSDGGRSG WEKREWLKRR MVRVEEERVG QEMEAFEIEK  360
ERLKWAKYSS KKEREMERKR LRNERAKLEN DRMVLLLKHK ELQIMSHFSQ QQQQQMGACN  420
NKRADPSSVT G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485858.11e-142PREDICTED: myb-like protein V
RefseqXP_012485859.11e-142PREDICTED: myb-like protein V
TrEMBLA0A0D2S4521e-142A0A0D2S452_G
STRINGBra029813.1-P1e-123(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-78sequence-specific DNA binding transcription factors